Research Areas: Interdisciplinary Science
0532-58631915
yangjy@sdu.edu.cn
2001.9-2005.6 Changsha University of Science & Technology
Mathematics
Bachelor of Science
2005.9-2008.6 Xiangtan University,
Mathematics
Master of Science
2009.1-2011.7 Nanyang Technological University
Mathematics
Doctor of Philosophy
1. Tianjin Natural Science Award (First Prize, 2022)
2. Championship in the 15th Critical Assessment of Protein Structure Prediction (CASP) (CASP15)
3. Highly Cited Researcher (Clarivate, 2023)
4. Highly Cited Chinese Researchers (Elsevier, 2022-2024)
5. Intelligent Computing Innovators China 2023 (MIT Technology Review China 2024)
6. Outstanding PhD and Master's Thesis Advisor of Tianjin (2022)
7. Outstanding PhD Thesis Advisor of Nankai University (2022, 2023)
8. Outstanding Master's Thesis Advisor of Nankai University (2019, 2022)
9. Fok Ying Tung Young Teacher Fund (2018)
Thousand Youth Talents Plan of China (2016)
1. Wenkai Wang#, Chenjie Feng#, Renmin Han#, Ziyi Wang, Lisha Ye, Zongyang Du, Hong Wei, Fa Zhang*, Zhenling Peng*, Jianyi Yang*, trRosettaRNA: automated prediction of RNA 3D structure with transformer network, Nature Communications, 14: 7266, 2023.
2. Wenkai Wang, Zhenling Peng, Jianyi Yang*, Single-sequence protein structure prediction using supervised transformer protein language models, Nature Computational Science, 2: 804-814, 2022.
3. Zhenling Peng#, Wenkai Wang#, Renmin Han#, Fa Zhang*, Jianyi Yang*, Protein structure prediction in the deep learning era, Current Opinion in Structural Biology, 77: 102495, 2022.
4. Zongyang Du#, Hong Su#, Wenkai Wang, Lisha Ye, Hong Wei, Zhenling Peng, Ivan Anishchenko, David Baker, Jianyi Yang*, The trRosetta server for fast and accurate protein structure prediction, Nature Protocols, 16: 5634-5651, 2021.
5. Hong Su#, Wenkai Wang#, Zongyang Du, Zhenling Peng, Shang-Hua Gao, Ming-Ming Cheng, Jianyi Yang*, Improved protein structure prediction using a new multi-scale network and homologous templates, Advanced Science, 8, 2102592, 2021.
6. Jianyi Yang#, Ivan Anishchenko#, Hahnbeom Park, Zhenling Peng, Sergey Ovchinnikov, David Baker*, Improved protein structure prediction using predicted interresidue orientations, PNAS, 117: 1496-1503, 2020.
7. Qi Wu, Zhenling Peng*, Yang Zhang, Jianyi Yang*, COACH-D: improved protein-ligand binding site prediction with refined ligand-binding poses through molecular docking, Nucleic Acids Research, 46: W438-W442, 2018.
8. Runze Dong#, Shuo Pan#, Zhenling Peng*, Yang Zhang, Jianyi Yang*, mTM-align: a server for fast protein structure database search and multiple protein structure alignment, Nucleic Acids Research, 46: W380-W386, 2018.
9. Jianyi Yang*, Yang Zhang*, I-TASSER server: new development for protein structure and function predictions, Nucleic Acids Research, 43: W174-W181, 2015.
10. Jianyi Yang, Renxiang Yan, Ambrish Roy, Dong Xu, Jonathan Poisson, Yang Zhang, The I-TASSER Suite: Protein structure and function prediction, Nature Methods, 12: 7-8, 2015.
1. 2023.01-2027.12 The National Science Fund for Distinguished Young Scholars
2. 2019.01-2022.12 General Program of the National Natural Science Foundation of China
3. 2018.02-2021.03 Fok Ying Tung Young Teacher Fund
4. 2016.10-2019.10 Thousand Youth Talents Plan of China
